Web(character) operations to be passed to fslmaths. Value. If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE. Note. … WebNov 7, 2024 · 3 1. Hi Sophie, welcome to Stack Overflow (SO). This questions need to have better tags on it, since whilst it is running under Unix, it isn't a Unix specific question. The …
For multi-echo data, `-add` does not match the expected results ...
Webfslmaths orig_phase0 -mul 3.14159 -div 2048 phase0_rad -odt float fslmaths orig_phase1 -mul 3.14159 -div 2048 phase1_rad -odt float. Note that the value of 2048 needs to be adjusted for each different site/scanner/sequence in order to be correct. The final range of the phase0_rad image should be approximately 0 to 6.28. WebAssuming that a cluster index file has been created (e.g., as above) then any particular cluster can be extracted using fslmaths. For example, to extract a mask that contained only cluster number 7 we would do: fslmaths -dt int cluster_index -thr 7 -uthr 7 -bin cluster_mask7. Reporting Cluster Information. Z-stat (without GRF statistics): focus swords
fslmaths.help: FSL Maths Help in fslr: Wrapper Functions for
WebJan 26, 2024 · In the standard FSLMATHS implementation in FSL, there is a parameter -inm to do intensity normalisation (per 3D volume mean). It is not clear to me how this is implemented in Nipype. Checking the manual at Neuroimaging in Python - Pipelines and Interfaces — nipy pipeline and interfaces package did not show the same parameter. … Web(character) operations to be passed to fslmaths. Value. If retimg then object of class nifti. Otherwise, Result from system command, depends if intern is TRUE or FALSE. Note. Functions with underscores have different defaults and will return an output filename, so to be used for piping. WebThe threshold used (with fslmaths) should be set depending on the intended use of the output mask. These guidelines should help in determining the correct value to use: a … focus swtor