Identification of a major qtl rna-seq

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August undefined, 2024

Web2 okt. 2024 · The locus qPRL-C06 identified by QTL-seq was repeatedly detected at both an optimal P supply and a low P supply by conventional QTL mapping. This major … Webing QTL-seq and RNA-seq was developed, and it can identify chromosome fragments or genes that can be verified by each other. Lately, a major QTL on chromo-some 6 for …

Identification of heat-tolerance QTLs and high-temperature stress ...

Web11 sep. 2024 · To investigate the genes involved in heat tolerance within the major QTLs in tomato, RNA-seq analysis was performed, and four candidate genes (SlCathB2, SlGST, … Web13 nov. 2024 · Detection of a major QTL controlling capsaicinoid accumulation in the pericarp. Our QTL analysis revealed a total of 16 QTLs associated with capsaicinoid … laying on back when pregnant

Fine mapping and RNA-Seq unravels candidate genes for a major QTL ...

Web5 feb. 2024 · A novel quantitative trait locus (QTL) named qCmPMR-12 for resistance to PM on chromosome 12 was identified, which ranged from 22.0 Mb to 22.9 Mb. RNA-Seq analysis indicated that the... Web21 mrt. 2024 · A major fraction of loci identified by genome-wide association studies (GWASs) lead to alterations in alternative splicing, but interpretation of how such alterations impact proteins is hindered by the technical limitations of short-read RNA-seq, which cannot directly link splicing events to full-length transcript or protein isoforms. Long-read RNA … Web7 mei 2012 · A. RNA-Seq reads shown in the Integrative Genomics Viewer. Blue indicates reads that have a forward orientation relative to the reference genome; red indicates reverse orientation. B. Based on the supporting ESTs and the annotation from the gene models, the gl3 gene contains only a single exon. laying on back with legs up

Identification of heat-tolerance QTLs and high-temperature stress ...

Development of KASP Markers and Identification of a QTL …

Web16 apr. 2024 · In summary, the integration of QTL mapping and RNA-Seq analysis assisted us to narrow down the region within the identified QTLs, where the likely underlying candidate genes can be detected. We found … Web23 mrt. 2024 · Quantitative trait locus (QTL) mapping approaches that employ next-generation sequencing (NGS), QTL sequencing and RNA-seq are powerful in identifying … kathryn carothersWeb13 nov. 2024 · A whole-genome sequencing-based QTL-seq strategy was employed, identifying a major QTL on chromosome 6. To validate the QTL on chromosome 6, we performed traditional QTL mapping using the same population in QTL-seq with an additional biparental population. kathryn casey books

"Web10 aug. 2024 · Recently, a method of combining QTL-seq and RNA-seq was developed, and it can identify chromosome fragments or genes that can be verified by each other. Lately, a major QTL on chromosome 6 for capsaicinoid content was identified using QTL-seq and high-density genetic maps, and candidate genes were revealed by combining … " - Identification of a major qtl rna-seq

Identification of a major qtl rna-seq

Frontiers Identification and Validation of Major QTLs, Epistatic ...

Web20 sep. 2024 · The RNA samples of the two bulks and the two parents were sequenced for SNPs identification. Stem rust resistance QTL was validated on chromosome 2U of Ae. umbellulata in the same region in … Web19 jun. 2024 · Although the technique enables rapid location of the major QTL, confidence interval (CI) resolution remains less than optimal. Therefore, researchers have had to combine QTL-seq with fine mapping [ 29] and RNA-seq [ 30] in order to identify candidate genes with a QTL.

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Web1 feb. 2024 · By combining QTL mapping and dynamic RNA-seq, here we identified a candidate gene BnaC09.APT5, which exhibited differential expression pattern between … Web7 feb. 2024 · Kernel row number is an important component of grain yield in maize. With development of classical quantitative trait loci (QTL) mapping and modern RNA-seq, numerous QTL and tissue-specific gene expression data were accumulated in previous studies. In this paper, a total of initial 373 QTL for grain yield (GY) and kernel row …

WebA major QTL and candidate genes controlling capsaicinoid content in the pericarp were identified by QTL-seq and RNA-seq in Capsicum chinense. Capsaicinoid biosynthesis … WebWaterlogging has increasingly become one of the major constraints to maize productivity in some maize production zones because it causes serious yield loss Bulked segregant RNA-seq (BSR-seq) has been widely applied to profile candidate genes and map associated Single Nucleotide Polymorphism (SNP) markers in many species In this study, ten …

Web16 apr. 2024 · For chlorosis and necrosis traits, the major QTL explained 47.24% and 38.59% of the phenotypic variance, respectively. RNA-Seq analysis of the parental … Web11 sep. 2024 · Identification of QTLs controlling the heat injury index in tomato using QTL-seq. The heat injury phenotypes in the 200 F 2 plants were found to be significantly different after 48 h of high-temperature stress treatment by observing the growth status of the true leaves and the whole plant. Extremely heat-tolerant strains showed no apparent …

WebDNA sequencing is the process of determining the nucleic acid sequence – the order of nucleotides in DNA.It includes any method or technology that is used to determine the order of the four bases: adenine, guanine, …

WebWaterlogging has increasingly become one of the major constraints to maize productivity in some maize production zones because it causes serious yield loss Bulked segregant … kathryn cavanaugh grace beautyWeb30 mei 2024 · Request PDF Integrating GWAS, QTL, mapping and RNA-seq to identify candidate genes for seed vigor in rice (Oryza sativa L.) Seed vigor is an important seed quality trait in rice (Oryza sativa ... laying on back termWeb23 mrt. 2024 · Fine mapping narrowed down BnaC08cqDTF to an 86-kb region on chromosome C08. The region harbored fifteen genes. After comparative analyses of the … laying on beach imageWeb19 feb. 2024 · Ten QTLs for seed Fe and Zn content identified in the GB RIL population are shown on the right side of the corresponding linkage group. Red, purple, green, and orange represent the 18GZ, 18ZC, 19GZ, and 19ZC environments, respectively. Cyan represents the QTLs using QEI mapping analysis Full size image laying on beach chair drawingWeb1 sep. 2024 · We used CIM method to determine the QTLs resistant to SCR in each of the three environments. In total four QTLs were detected, in which one QTL (qSCR1) was located on chromosome 5, two QTLs (qSCR2-1 and qSCR2-2) were located on chromosome 9, and one QTL (qSCR3) was located on chromosome 10 (Table 1).All of … laying on beach chair silhouetteWeb16 apr. 2024 · Combined QTL mapping and RNA-Seq profiling reveals candidate genes associated with cadmium tolerance in barley.pdf Available via license: CC BY Content may be subject to copyright. laying on beach chairWebThe first QTL mapped by QTL-seq overlapped with the major QTL detected by the QTL linkage analysis in the 1.0 to 1.9 Mb region of chromosome 3. Six of the QTLs from … laying on back while pregnant dangerous