Teiresias algorithm
WebFeb 1, 1998 · TEIRESIAS [13] is a combinatorial, local search algorithm, which is competent to output each pattern present in the minimum (user-defined) number of … WebResults: This paper presents a new algorithm for the discovery of rigid patterns (motifs) in biological sequences. Our method is combinatorial in nature and able to produce all …
Teiresias algorithm
Did you know?
The Teiresias algorithm is a combinatorial algorithm for the discovery of rigid patterns (motifs) in biological sequences. It is named after the Greek prophet Teiresias and was created in 1997 by Isidore Rigoutsos and Aris Floratos. The problem of finding sequence similarities in the primary structure … See more The Teiresias algorithm uses regular expressions to define the patterns. This allows the patterns reported to consist not only from the characters that appear in each position (literals) but from a specific group of characters … See more The algorithm is "output-sensitive." The time complexity of the TEIRESIAS algorithm is See more Teiresias consists of two phases, Scanning and Convolution. During the first phase the input is scanned for the patterns that satisfy the minimum requirements, the elementary patterns. The elementary patterns consist of exactly L literals and/or bracketed literals … See more • A C++ based implementation of the algorithm can be found here. • The interactive web-based user interface of Teiresias can be found here. See more http://www2.ensc.sfu.ca/~whitmore/courses/ensc305/pdf%20files/Hu%20Thesis%20Example.pdf
WebThis paper presents a new algorithm for the discovery of rigid patterns (motifs) in biological sequences. Our method is combinatorial in nature and able to produce all patterns that … WebTeiresias, this algorithm was designed to detect variable length patterns in long sequences. Initially, this algorithm was used to detect sequences in human DNA and …
WebTEIRESIAS Algorithm Designed for unaligned sequences Basic Idea: If a pattern P is a (L, W) pattern occurring in at least K sequences, then its sub patterns are also (L, …
WebThe Teiresias algorithm operates in two phases [9]: Scan and Convolution . Firstly, scan the input sequences, identify all the elementary patterns and then select the elementary …
WebThe algorithm TEIRESIAS begins by scanning the sequences in the input set S and locating all elementary patterns with support at least K. An elementary pattern is just a … smackdown 2010 resultsWebsignature keys and their positions are extracted using the Teiresias algorithm. Teiresias is an algorithm that can detect and report all existing patterns in a set of input sequences … soldiers took city then homesWebThe Teiresias algorithm is a combinatorial algorithm for the discovery of rigid patterns (motifs) in biological sequences. It is named after the Greek prophet Teiresias and was … soldiers to color